Welcome to pmlbeta’s documentation!

pmlbeta is an extension for PyMOL, containing utilities and algorithms for dealing with β-peptides. It has facilities for creating and manipulating geometries of natural α- and artificial β- and even mixed α/β-peptides.

This program has been developed by the BioNano Platform of the Research Centre for Natural Sciences, Hungarian Academy of Sciences

Contents:

• Installation
  • Requirements
  • Installing from a pre-built package
  • Manual installation
• Quick start
  • Command line
  • Graphical user interface
    • Betafab GUI
    • Secondary structure editor
• β-amino acid residue naming
  • General nomenclature
  • Simplified nomenclature
  • Secondary structure
    • Single-letter side-chain codes
• Secondary structure database
  • Python API documentation
• Commands
  • α/β-peptide Construction and Manipulation
  • Input / Output
  • Secondary structure database manipulation
  • Miscellaneous
• Reporting bugs

Indices and tables

• Index
• Module Index
• Search Page